Biblio

P. Gupta, Naithani, S., Preece, J., Kim, S., Cheng, T., D'Eustachio, P., Elser, J., Bolton, E. E., and Jaiswal, P., “Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases.”, Methods Mol Biol, vol. 2443, pp. 511-525, 2022.

S. Naithani, Preece, J., D’Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. Munoz- Pome, Petryszak, R., Stein, L. D., Ware, D., and Jaiswal, P., “Plant Reactome: a resource for plant pathways and comparative analysis.”, Nucleic acids research, vol. 45, pp. D1029-D1039, 2018.

K. GUNJAL, MENARD, L., SHANMUGAM, R., KHAN, M. A., SINGH, G., NAAZIE, A., MAKARECHIAN, M., HUDSON, R. J., Drapek, R. J., FISHER, G., and , “PL MITCHELL (UK)”, Agricultural Systems, vol. 54, pp. 577–578, 1997.

E. Naumburg, Mata-González, R., Hunter, R. G., McLendon, T., and Martin, D. W., “Phreatophytic vegetation and groundwater fluctuations: a review of current research and application of ecosystem response modeling with an emphasis on great basin vegetation”, Environmental Management, vol. 35, no. 6, pp. 726 - 740, 2005.

D. E. Haggard, Noyes, P. D., Waters, K. M., and Tanguay, R. L., “Phenotypically anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish.”, Toxicol Appl Pharmacol, vol. 308, 2016.

D. E. Haggard, Noyes, P. D., Waters, K. M., and Tanguay, R. L., “Phenotypically anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish.”, Toxicol Appl Pharmacol, vol. 308, pp. 32-45, 2016.

T. Nguyen, Thi, N., Le, T., Havukainen, J., and Hannaway, D. B., “Pesticide use in vegetable production: A survey of Vietnamese farmers' knowledge”, Plant Protection Science, vol. 54, pp. 203-214, 2018.

D. F. Bradford, Knapp, R. A., Sparling, D. W., Nash, M. S., Stanley, K. A., Tallent-Halsell, N. G., McConnell, L. L., and Simonich, S. L. Massey, “Pesticide distributions and population declines of California, USA, alpine frogs, Rana muscosa and Rana sierrae”, Environmental Toxicology and Chemistry, vol. 30, no. 3, pp. 682 - 691, 2011.

M. W. I. Schmidt, Torn, M. S., Abiven, S., Dittmar, T., Guggenberger, G., Janssens, I. A., Kleber, M., ögel-Knabner, I., Lehmann, J., Manning, D. A. C., Nannipieri, P., Rasse, D. P., Weiner, S., and Trumbore, S. E., “Persistence of soil organic matter as an ecosystem property”, Nature, vol. 47, no. 7, pp. 49 - 56, 2011.

P. S. Doescher, Goodwin, J., Eddleman, L. E., Miller, R. F., Jaindl, R., and Nasri, M., “PERSISTENCE OF IDAHO FESCUE ON DEGRADED JUNIPER/SAGEBRUSH/STEPPE IN CENTRAL OREGON”, History, Ecology, and Management, p. 50, 1999.

J. F. Hancock, Olmstead, J. W., Itle, R. A., Callow, P. W., Neils-Kraft, S., Wheeler, E. J., Mangandi, J., Sooriyapathirana, S. S., Rowland, L. J., Mackey, T. A., Bassil, N. V., and Finn, C. E., “Performance of an elite, hybrid family of a northern × southern highbush cross (‘Draper’ × ‘Jewel’)”, Euphytica, vol. 21433762641111128101738446611117882030123610713012344953, no. 6, 2018.

J. Harrington, Byrne, P., Peairs, F. B., Nissen, S. J., Westra, P., Ellsworth, P. C., Fournier, A., Mallory-Smith, C. A., Zemetra, R. S., and Henry, W. B., “Perceived Consequences of Herbicide-Tolerant and Insect-Resistant Crops on Integrated Pest Management Strategies in the Western United States: Results of an Online Survey.”, AgBioForum, 2010.

S. Singha, Shao, K., Yang, Y., Clemente-Casares, X., Solé, P., Clemente, A., Blanco, J., Dai, Q., Song, F., Liu, S. Wan, Yamanouchi, J., Umeshappa, C. Sokke, Nanjundappa, R. Hebbandi, Detampel, P., Amrein, M., Fandos, C., Tanguay, R., Newbigging, S., Serra, P., Khadra, A., Chan, W. C. W., and Santamaria, P., “Peptide-MHC-based nanomedicines for autoimmunity function as T-cell receptor microclustering devices.”, Nat Nanotechnol, vol. 12, no. 7, pp. 701-710, 2017.

S. Singha, Shao, K., Yang, Y., Clemente-Casares, X., Solé, P., Clemente, A., Blanco, J., Dai, Q., Song, F., Liu, S. Wan, Yamanouchi, J., Umeshappa, C. Sokke, Nanjundappa, R. Hebbandi, Detampel, P., Amrein, M., Fandos, C., Tanguay, R., Newbigging, S., Serra, P., Khadra, A., Chan, W. C. W., and Santamaria, P., “Peptide-MHC-based nanomedicines for autoimmunity function as T-cell receptor microclustering devices.”, Nat Nanotechnol, vol. 12, no. 7, pp. 701-710, 2017.

R. Mata-González, Evans, T. L., Martin, D. W., McLendon, T., Noller, J. S., Wan, C., and Sosebee, R. E., “Patterns of Water Use by Great Basin Plant Species Under Summer Watering”, Arid Land Research and Management, vol. 28, no. 4, pp. 428 - 446, 2014.

K. M. Andersen, Naylor, B. J., Endress, B. A., and Parks, C. G., “Patterns of non-native plant species invasions in the Wallowa Mountains, Northeast Oregon, USA”, Biological Invasions, 2017.

S. Naithani and Jaiswal, P., “Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.”, Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 241-256, 2017.

S. Yilma, Vales, M. I., Charlton, B. A., Hane, D. C., James, S. R., Shock, C. C., Mosley, A. R., Culp, D., Feibert, E., Leroux, L., Karaagac, E., Knowles, N. R., Pavek, M. J., Stark, J. C., Novy, R. G., Whitworth, J. L., Pavek, J. J., Corsini, D. L., Brandt, T. L., Olsen, N., and Brown, C. R., “Owyhee Russet: A Variety with High Yields of U.S. No. 1 Tubers, Excellent Processing Quality, and Moderate Resistance to Fusarium Dry Rot (Fusarium solani var. coeruleum)”, American Journal of Potato Research, vol. 89, no. 3, pp. 175 - 183, 2012.

J. Aber, Neilson, R. P., McNulty, S., Lenihan, J. M., Bachelet, D., and Drapek, R. J., “Overview articles-a special section on climate change and forest ecosystems-forest processes and global environmental change: Predicting the effects of individual and multiple stressors”, 2001.

S. L. Gibson, Narayanan, L., Hegan, D. Campisi, Buermeyer, A. B., R. Liskay, M., and Glazer, P. M., “Overexpression of the DNA mismatch repair factor, PMS2, confers hypermutability and DNA damage tolerance”, Cancer Letters, vol. 244, no. 2, pp. 195 - 202, 2006.

S. O. Norberg, Brown, B., and Shock, C. C., “Optimizing Nitrogen Use for Irrigated Waxy Barley”, Crop Management, vol. 9, no. 1, p. 00, 2010.

R. P. Neilson, Bachelet, D., Stephen, W., and , “OOS 42-10: Global modeling and prediction of climate-induced forest dieback”, 2007.

A. Oellrich, Walls, R. L., Cannon, E. K. S., Cannon, S. B., Cooper, L., Gardiner, J., Gkoutos, G. V., Harper, L., He, M., Hoehndorf, R., Jaiswal, P., Kalberer, S. R., Lloyd, J. P., Meinke, D., Menda, N., Moore, L., Nelson, R. T., Pujar, A., Lawrence, C. J., and Huala, E., “An ontology approach to comparative phenomics in plants.”, Plant methods, vol. 11, p. 10, 2015.

M. Kleber, Nico, P. S., PLANTE, A. L. A. I. N., FILLEY, T. I. M. O. T. H. Y. R., KRAMER, M. A. R. C., SWANSTON, C. H. R. I. S. T. O. P. H. E. R., and SOLLINS, P. H. I. L. L. I. P., “Old and stable soil organic matter is not necessarily chemically recalcitrant: implications for modeling concepts and temperature sensitivity”, Global Change Biology, vol. 17, no. 2, pp. 1097 - 1107, 2011.

J. Egan, Nickerson, N., Phillips, C. L., and Risk, D., “A Numerical Examination of 14CO2 Chamber Methodologies for Sampling at the Soil Surface”, Radiocarbon, vol. 56, no. 03, pp. 1175 - 1188, 2014.