1. Biblio

Biblio

Found 39 results
Author Title [ Type(Asc)] Year
Filters: Keyword is Gene Expression Profiling  [Clear All Filters]
Journal Article
E. Ho, Dukovcic, S., Hobson, B., Wong, C. P., Miller, G., Hardin, K., Traber, M. G., and Tanguay, R. L., “Zinc transporter expression in zebrafish (Danio rerio) during development.”, Comp Biochem Physiol C Toxicol Pharmacol, vol. 155, no. 1, pp. 26-32, 2012.
E. Monaco, Bionaz, M., Rodriguez-Zas, S., Hurley, W. L., and Wheeler, M. B., “Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation.”, PLoS One, vol. 7, no. 3, p. e32481, 2012.
D. E. Haggard, Noyes, P. D., Waters, K. M., and Tanguay, R. L., “Transcriptomic and phenotypic profiling in developing zebrafish exposed to thyroid hormone receptor agonists.”, Reprod Toxicol, vol. 77, pp. 80-93, 2018.
L. Truong, Tilton, S. C., Zaikova, T., Richman, E., Waters, K. M., Hutchison, J. E., and Tanguay, R. L., “Surface functionalities of gold nanoparticles impact embryonic gene expression responses.”, Nanotoxicology, vol. 7, no. 2, pp. 192-201, 2013.
S. - J. Ahn, Oh, H. - W., Corcoran, J., Kim, J. - A., Park, K. - C., Park, C. Gyoo, and Choi, M. - Y., “Sex-biased gene expression in antennae of Drosophila suzukii.”, Arch Insect Biochem Physiol, vol. 104, no. 1, p. e21660, 2020.
E. Monaco, Bionaz, M., de Lima, A. Sobreira, Hurley, W. L., Loor, J. J., and Wheeler, M. B., “Selection and reliability of internal reference genes for quantitative PCR verification of transcriptomics during the differentiation process of porcine adult mesenchymal stem cells.”, Stem Cell Res Ther, vol. 1, no. 1, p. 7, 2010.
E. A. Andreasen, Mathew, L. K., and Tanguay, R. L., “Regenerative growth is impacted by TCDD: gene expression analysis reveals extracellular matrix modulation.”, Toxicol Sci, vol. 92, no. 1, pp. 254-69, 2006.
T. M. Grala, Kay, J. K., Phyn, C. V. C., Bionaz, M., Walker, C. G., Rius, A. G., Snell, R. G., and Roche, J. R., “Reducing milking frequency during nutrient restriction has no effect on the hepatic transcriptome of lactating dairy cattle.”, Physiol Genomics, vol. 45, no. 23, pp. 1157-67, 2013.
D. E. Haggard, Noyes, P. D., Waters, K. M., and Tanguay, R. L., “Phenotypically anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish.”, Toxicol Appl Pharmacol, vol. 308, pp. 32-45, 2016.
M. Bionaz, Periasamy, K., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Hurley, W. L., and Loor, J. J., “Old and new stories: revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle.”, PLoS One, vol. 7, no. 3, p. e33268, 2012.
M. Bionaz, Periasamy, K., Rodriguez-Zas, S. L., Hurley, W. L., and Loor, J. J., “A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: validation using the bovine mammary transcriptome.”, PLoS One, vol. 7, no. 3, p. e32455, 2012.
L. A. Sayavedra-Soto, Ferrell, R., Dobie, M., Mellbye, B., Chaplen, F., Buchanan, A., Chang, J. H., Bottomley, P. J., and Arp, D. J., “Nitrobacter winogradskyi transcriptomic response to low and high ammonium concentrations.”, FEMS Microbiol Lett, vol. 362, no. 3, pp. 1-7, 2015.
T. L. Tal, Franzosa, J. A., Tilton, S. C., Philbrick, K. A., Iwaniec, U. T., Turner, R. T., Waters, K. M., and Tanguay, R. L., “MicroRNAs control neurobehavioral development and function in zebrafish.”, FASEB J, vol. 26, no. 4, pp. 1452-61, 2012.
B. C. Goodale, La Du, J., Tilton, S. C., Sullivan, C. M., Bisson, W. H., Waters, K. M., and Tanguay, R. L., “Ligand-Specific Transcriptional Mechanisms Underlie Aryl Hydrocarbon Receptor-Mediated Developmental Toxicity of Oxygenated PAHs.”, Toxicol Sci, vol. 147, no. 2, pp. 397-411, 2015.
S. Tramontana, Bionaz, M., Sharma, A., Graugnard, D. E., Cutler, E. A., Ajmone-Marsan, P., Hurley, W. L., and Loor, J. J., “Internal controls for quantitative polymerase chain reaction of swine mammary glands during pregnancy and lactation.”, J Dairy Sci, vol. 91, no. 8, pp. 3057-66, 2008.
K. Shahzad, Bionaz, M., Trevisi, E., Bertoni, G., Rodriguez-Zas, S. L., and Loor, J. J., “Integrative analyses of hepatic differentially expressed genes and blood biomarkers during the peripartal period between dairy cows overfed or restricted-fed energy prepartum.”, PLoS One, vol. 9, no. 6, p. e99757, 2014.
A. K. G. Kadegowda, Bionaz, M., Thering, B., Piperova, L. S., Erdman, R. A., and Loor, J. J., “Identification of internal control genes for quantitative polymerase chain reaction in mammary tissue of lactating cows receiving lipid supplements.”, J Dairy Sci, vol. 92, no. 5, pp. 2007-19, 2009.
R. L. Tanguay, Andreasen, E., Heideman, W., and Peterson, R. E., “Identification and expression of alternatively spliced aryl hydrocarbon nuclear translocator 2 (ARNT2) cDNAs from zebrafish with distinct functions.”, Biochim Biophys Acta, vol. 1494, no. 1-2, pp. 117-28, 2000.
Y. Li, Mezei, O., and Shay, N. F., “Human and murine hepatic sterol-12-alpha-hydroxylase and other xenobiotic metabolism mRNA are upregulated by soy isoflavones.”, J Nutr, vol. 137, no. 7, pp. 1705-12, 2007.
K. S. Saili, Tilton, S. C., Waters, K. M., and Tanguay, R. L., “Global gene expression analysis reveals pathway differences between teratogenic and non-teratogenic exposure concentrations of bisphenol A and 17β-estradiol in embryonic zebrafish.”, Reprod Toxicol, vol. 38, pp. 89-101, 2013.
C. D. Curtin and Pretorius, I. S., “Genomic insights into the evolution of industrial yeast species Brettanomyces bruxellensis.”, FEMS Yeast Res, vol. 14, no. 7, pp. 997-1005, 2014.
V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. Carlos, Celton, J. - M., D Rees, J. G., Williams, K. P., Holt, S. H., Rojas, J. Jairo Ruiz, Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. Lopez, Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., “The genome of woodland strawberry(Fragaria vesca).”, Nature genetics, vol. 43, pp. 109-16, 2011.
M. Bionaz and Loor, J. J., “Gene networks driving bovine milk fat synthesis during the lactation cycle.”, BMC Genomics, vol. 9, p. 366, 2008.
P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Akers, M., and Loor, J. J., “Gene expression ratio stability evaluation in prepubertal bovine mammary tissue from calves fed different milk replacers reveals novel internal controls for quantitative polymerase chain reaction.”, J Nutr, vol. 138, no. 6, pp. 1158-64, 2008.
P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, H. L., Akers, M., and Loor, J. J., “Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development.”, BMC Genomics, vol. 11, p. 331, 2010.