Biblio | College of Agricultural Sciences

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A

M. Bionaz and Loor, J. J., “ACSL1, AGPAT6, FABP3, LPIN1, and SLC27A6 are the most abundant isoforms in bovine mammary tissue and their expression is affected by stage of lactation.”, J Nutr, vol. 138, no. 6, pp. 1019-24, 2008.

R. L. Tanguay and Reimers, M. J., “Analysis of ethanol developmental toxicity in zebrafish.”, Methods Mol Biol, vol. 447, pp. 63-74, 2008.

E. F. O'Donnell, Jang, H. Sang, Pearce, M. C., Kerkvliet, N. I., and Kolluri, S., “The aryl hydrocarbon receptor is required for induction of p21cip1/waf1 expression and growth inhibition by SU5416 in hepatoma cells.”, Oncotarget, vol. 8, no. 15, pp. 25211-25225, 2017.

C

S. Lal, La Du, J., Tanguay, R. L., and Greenwood, J. A., “Calpain 2 is required for the invasion of glioblastoma cells in the zebrafish brain microenvironment.”, J Neurosci Res, vol. 90, no. 4, pp. 769-81, 2012.

L. K. Mathew, Sengupta, S., Franzosa, J. A., Perry, J., La Du, J., Andreasen, E. A., and Tanguay, R. L., “Comparative expression profiling reveals an essential role for raldh2 in epimorphic regeneration.”, J Biol Chem, vol. 284, no. 48, pp. 33642-53, 2009.

L. Resman, Howe, G., Jonsen, D., Englund, M., Druart, N., Schrader, J., Antti, H., Skinner, J., Sjödin, A., Chen, T. H. H., and Bhalerao, R. P., “Components acting downstream of short day perception regulate differential cessation of cambial activity and associated responses in early and late clones of hybrid poplar.”, Plant Physiol, vol. 154, no. 3, pp. 1294-303, 2010.

D

A. C Quandt, Di, Y., Elser, J., Jaiswal, P., and Spatafora, J. W., “Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.”, G3 (Bethesda, Md.), vol. 6, pp. 731-41, 2016.

H. Xu, Bionaz, M., Sloboda, D. M., Ehrlich, L., Li, S., Newnham, J. P., Dudenhausen, J. W., Henrich, W., Plagemann, A., Challis, J. Rg, and Braun, T., “The dilution effect and the importance of selecting the right internal control genes for RT-qPCR: a paradigmatic approach in fetal sheep.”, BMC Res Notes, vol. 8, p. 58, 2015.

E

J. Chen, Huang, C., Truong, L., La Du, J., Tilton, S. C., Waters, K. M., Lin, K., Tanguay, R. L., and Dong, Q., “Early life stage trimethyltin exposure induces ADP-ribosylation factor expression and perturbs the vascular system in zebrafish.”, Toxicology, vol. 302, no. 2-3, pp. 129-39, 2012.

S. Xu, Liu, H., Fan, Y., Schaller, R., Jiao, J., and Chaplen, F., “Enhanced performance and mechanism study of microbial electrolysis cells using Fe nanoparticle-decorated anodes.”, Appl Microbiol Biotechnol, vol. 93, no. 2, pp. 871-80, 2012.

M. F. Jiang, Lee, J. Nam, Bionaz, M., Deng, X. Yu, and Wang, Y., “Evaluation of Suitable Internal Control Genes for RT-qPCR in Yak Mammary Tissue during the Lactation Cycle.”, PLoS One, vol. 11, no. 1, p. e0147705, 2016.

F. Tilton and Tanguay, R. L., “Exposure to sodium metam during zebrafish somitogenesis results in early transcriptional indicators of the ensuing neuronal and muscular dysfunction.”, Toxicol Sci, vol. 106, no. 1, pp. 103-12, 2008.

V. V. Peremyslov, Mockler, T. C., Filichkin, S. A., Fox, S. E., Jaiswal, P., Makarova, K. S., Koonin, E. V., and Dolja, V. V., “Expression, splicing, and evolution of the myosin gene family in plants.”, Plant physiology, vol. 155, pp. 1191-204, 2011.

F

M. Bionaz, Thering, B. J., and Loor, J. J., “Fine metabolic regulation in ruminants via nutrient-gene interactions: saturated long-chain fatty acids increase expression of genes involved in lipid metabolism and immune response partly through PPAR-α activation.”, Br J Nutr, vol. 107, no. 2, pp. 179-91, 2012.

P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, H. L., Akers, M., and Loor, J. J., “Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development.”, BMC Genomics, vol. 11, p. 331, 2010.

G

P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Akers, M., and Loor, J. J., “Gene expression ratio stability evaluation in prepubertal bovine mammary tissue from calves fed different milk replacers reveals novel internal controls for quantitative polymerase chain reaction.”, J Nutr, vol. 138, no. 6, pp. 1158-64, 2008.

M. Bionaz and Loor, J. J., “Gene networks driving bovine milk fat synthesis during the lactation cycle.”, BMC Genomics, vol. 9, p. 366, 2008.

V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. Carlos, Celton, J. - M., D Rees, J. G., Williams, K. P., Holt, S. H., Rojas, J. Jairo Ruiz, Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. Lopez, Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., “The genome of woodland strawberry(Fragaria vesca).”, Nature genetics, vol. 43, pp. 109-16, 2011.

C. D. Curtin and Pretorius, I. S., “Genomic insights into the evolution of industrial yeast species Brettanomyces bruxellensis.”, FEMS Yeast Res, vol. 14, no. 7, pp. 997-1005, 2014.

K. S. Saili, Tilton, S. C., Waters, K. M., and Tanguay, R. L., “Global gene expression analysis reveals pathway differences between teratogenic and non-teratogenic exposure concentrations of bisphenol A and 17β-estradiol in embryonic zebrafish.”, Reprod Toxicol, vol. 38, pp. 89-101, 2013.

H

Y. Li, Mezei, O., and Shay, N. F., “Human and murine hepatic sterol-12-alpha-hydroxylase and other xenobiotic metabolism mRNA are upregulated by soy isoflavones.”, J Nutr, vol. 137, no. 7, pp. 1705-12, 2007.

I

R. L. Tanguay, Andreasen, E., Heideman, W., and Peterson, R. E., “Identification and expression of alternatively spliced aryl hydrocarbon nuclear translocator 2 (ARNT2) cDNAs from zebrafish with distinct functions.”, Biochim Biophys Acta, vol. 1494, no. 1-2, pp. 117-28, 2000.

A. K. G. Kadegowda, Bionaz, M., Thering, B., Piperova, L. S., Erdman, R. A., and Loor, J. J., “Identification of internal control genes for quantitative polymerase chain reaction in mammary tissue of lactating cows receiving lipid supplements.”, J Dairy Sci, vol. 92, no. 5, pp. 2007-19, 2009.

K. Shahzad, Bionaz, M., Trevisi, E., Bertoni, G., Rodriguez-Zas, S. L., and Loor, J. J., “Integrative analyses of hepatic differentially expressed genes and blood biomarkers during the peripartal period between dairy cows overfed or restricted-fed energy prepartum.”, PLoS One, vol. 9, no. 6, p. e99757, 2014.

S. Tramontana, Bionaz, M., Sharma, A., Graugnard, D. E., Cutler, E. A., Ajmone-Marsan, P., Hurley, W. L., and Loor, J. J., “Internal controls for quantitative polymerase chain reaction of swine mammary glands during pregnancy and lactation.”, J Dairy Sci, vol. 91, no. 8, pp. 3057-66, 2008.

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